biomeShiny: Visualize microbiome data

★ ☆ ☆ ☆ ☆ | 7 users

Author Ayla Navarro Data Scientist

About the app

biomeShiny is a graphical interface for visualizing microbiome data, primarily based around the "phyloseq" and "microbiome" libraries, with the "shiny" library being used to develop the interface. It provides a user-friendly interface to generate and visualize community composition and diversity through interactive plots. Biome-Shiny has a variety of visualizations and tables that can be used to subset and visualize a dataset. Biome-Shiny makes use of phyloseq's .biom importing functions to upload data. It accepts a .biom file as input, and requires metadata (sample_data() in phyloseq format files). This app is a product of BioData.pt, which develops tools to empower researchers and simplify the analysis of data. These tools are Shiny web applications developed in R, and wrap commonly-used analyses in an easy-to-use interface.

Data Safety

Safety starts with understanding how developers collect and share your data. Data privacy and security practices may vary based on your use, region, and age. The developer provided this information and may update it over time.

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ShinyAppStore is the leading platform for showcasing and utilizing a wide range of Shiny applications developed with the shiny R package. We will be expanding access to allow shiny apps built with Python as well. Users can submit and explore applications across various categories, add verified apps to their personal library, and enjoy easy access. The platform features well-designed apps with detailed descriptions and evaluations by users. All applications on ShinyAppStore are user-owned and open source, with the source code readily available for download on our GitHub page.
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