xenaShiny: Interactively Explore UCSC Cancer Omics Datasets

★ ☆ ☆ ☆ ☆ | 6 users

Last accessed Apr 03, 2025
Author Shixiang Wang Medical physicist

About the app

UCSCXenaShiny is an R package for interactively exploring UCSC Xena. It is mainly designed to provide a web app (built on the top of {shiny} framework and {UCSCXenaTools} package) for downloading, analyzing and visualizing datasets from the University of California, Santa Cruz Xena (UCSC Xena) dataset bank. Original citation: Shixiang Wang#, Yi Xiong#, Longfei Zhao#, Kai Gu#, Yin Li, Fei Zhao, Jianfeng Li, Mingjie Wang, Haitao Wang, Ziyu Tao, Tao Wu, Yichao Zheng, Xuejun Li, Xue-Song Liu, UCSCXenaShiny: An R/CRAN Package for Interactive Analysis of UCSC Xena Data, Bioinformatics, 2021;, btab561, https://doi.org/10.1093/bioinformatics/btab561. and Goldman, M.J., Craft, B., Hastie, M. et al. Visualizing and interpreting cancer genomics data via the Xena platform. Nat Biotechnol (2020). https://doi.org/10.1038/s41587-020-0546-8

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